The twelve-factor app told us to put config in the environment. Good advice. But .env files are a leaky implementation of that principle. They’re plaintext files pretending to be environment variables.
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We even tried building hierarchies with 2-3 levels, but the number of shortcuts grew too fast for higher levels if we generated a full graph inside each cluster.
My up-to-date AGENTS.md file for Python is available here, and throughout my time working with Opus, it adheres to every rule despite the file’s length, and in the instances where I accidentally query an agent without having an AGENTS.md, it’s very evident. It would not surprise me if the file is the main differentiator between those getting good and bad results with agents, although success is often mixed.